Maybe you should try to create this table again and check if there is an issue. You should use EPESI shell in /admin tools, execute this
DB::CreateTable('base_acl_permission_new',
'id I4 AUTO KEY,'.
'name C(255)',
array('constraints' => ''));
then try to execute what that patch does
Base_AclCommon::add_permission(_M('Dashboard - manage applets'),array('ACCESS:employee'));
It's hard to tell what's wrong without access, and when my installation works properly.
Regards,
Adam